Filogenas moleculares

Práctica virtual 2: filogenias moleculares
 
-Alineamiento múltiple y árbol filogenéticos con Phylogeny.fr
(http://www.phylogeny.fr/version2_cgi/index.cgi)

Ejercicio 1. Secuencias de ADN. Se trata de secuencias de varias especies bacterianas (eu y arqueobacterias) y un eucariota (la levadura). Las especies son:

1-E_coli (Escharichia coli) EUB
2-Sulfolobus AR
3-T_celer (Thermococcusceler) AR
4-D_mobilis (Desulfurococcus mobilis) AR
5-Thermoplas (Thermoplasma acidophilum) AR
6-T_tenax (Thermoproteus tenax) AR
7-Yeast (Saccharomyces cerevisiae) EUC
8-Methanobac (Methanobacterium) AR
9-Halobac (Halobacterium) AR
10-Haloarcula AR
11-M_thermo (Methanothermobacter) AR
12-Haloferax AR

>E_coli
AATTAGTTTGATCATGGCTCAGATGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGGAAGAAGCGCTCGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGG

ATAACTACTGGAAACGGTAGCTAATACCGCATACGTCGCAAGACCAAAGAGGGGGACCTT

CGGGCCTCGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCAC

CTAGGCGACGATCCCTACTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACGG

TCCAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCCTGATGC

AGCCATGCCGCGTGAAGAAGGCCTTCGGCCTTTGCTCATTGACGTTACCCGCAGAAGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTAATCGGAA

TTACTGGGCGTAAAGCGCACGCAGGCGGTTTGTTAAGTCAGATGTGAAATCCCCGGGCTC

AACCTGGGAACTGCATCTGATACTGGCAAGCTTGAGTCTCGTAGAGGGGGGTAGAATTCC

AGGTGTAGCGGTGAAATGCGTAGAGATCTGGAGGAATACCGGTGGCGAAGGCGGCCCCCT

GGACGAAGACTGACGCTCAGGTGCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGG

TAGTCCACGCCGTAAACGATGTCGACTTGGAGGTTGTGCCCTTGAGGCGTGGCTTCCGGAGCTAACGCGTTAAGTCGACCGCCTGGGGAGTACGGCCGCAAGGTTAAAACTCAAATGAAT

TGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAACGCGAAGAACC

TTACCTGGTCTGACATCCACAGAACTTTCCAGAGATGGATTTGCCTCGGGAACTGTGAGG

TGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCG

CAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGAT

AAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAA

AGTGCGTCGTAGTCCGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGT

AATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCA

CACCATGGGAGTGGGTTGCAAAAGAAGAACCTTCGGGGGGCTTACCTGTGATTCATGACT

GGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCT
>Sulfolobus
AATCCGGTTGATCCTGCCGGACCCGACCGCTATCGGGGTGGGGCTAAGCCATGGGAGTCGTACGGGCAAGGGAGCGTGGCGGACGGCTGAGTAACACGTGGCTAACCTACCCTGAGGAGG

GAGATAACCCCGGGAAACTGGGGATAATCTCCCATAGGCGAGGAGTCCTGGAACGGTTCC

TCGCTGAAAGGCCCCGCGCCTCAGGATGGGGCTGCGGCCCATCAGGTAGTTGGGGGGGTA

AGGGCCCCCCAAGCCTATAACGGGTAGGGGCCGTGAGAGCGGGAGCCCCCAGTTGGGCAC

TGAGACAAGGGCCCAGGCCTACGGGGCGCACCAGGCGCGAAACGTCCCCAATGCGCGGAA

GCGTGAGGGCGCCACCCCGAGTGCTCCCGTAAGGCTTTTCCCCGCTCTACAAAGGCGGGGGAATAAGCGGGGGGCAAGTCTGGTGTCAGCCGCCGCGGTAATACCAGCCCCGCGAGTGGT

CGGGACTCTTACTGGGCCTAAAGCGCCCGTAGCCGGCCCGACAAGTCACTCCTTAAAGAC

CCCGGCTCAACCGGGGGAATGGGGGTGATACTGTCGGGCTAGGGGGCGGGAGAGGCCAGC

GGTACTCCCGGAGTAGGGGCGAAATCCTCAGATCTCGGGAGGACCACCAGTGGCGAAAGC

GGCTGGCTAGAACGCGCCCGACGGTGAGGGGCGAAAGCCGGGGCAGCAAAAGGGATTAGA

TACCCCTGTAGTCCCGGCTGTAAACAATGCAGGCTAGGTGTCACATGGGCTTAGAGCCCA

TGTGGTGCCGCAGGGAAGCCGTTAAGCCTGCCGCCTGGGGAGTACGGTCGCAAGACTGAAACTTAAAGGAATTGGCGGGGGAGCACCACAAGGGGTGGAACCTGCGGCTCAATTGGAGTC

AACGCCTGGAATCTTACTAGGGGAGACCGCAGGATGACGGCCAGGCTAACGACCTTGCCT

GACTCGCGGAGAGGAGGTGCATGGCCGTCGCCAGCTCGTGTTGTGAAATGTCCTGTTAAG

TCAGGCAACGAGCGAGACCCCCACCACTAGTTGGTATCCTGGTCTCCGGGCCGGGACCAC

ACTAGTGGGACTGCCGGCGTAAGCCGGAGGAGGGAGGGGGCCACGGCAGGTCAGCATGCC

CCGAAACCCCTGGGCCGCACGCGGGTTACAATGGCAGGGACAGCGGGATCCGACCCCGAAAGGGGAAGGTAATCCCTTAAACCCTGCCGCAGTTGGGATCGAGGGCTGAAACTCGCCCTC

GTGAACGAGGAATCCCTAGTAACCGCAGATCAACAATCTGCGGTGAATACGTCCCTGCTC

CTTGCACACACCGCCCGTCGCTCCACCCGAGTAGGAGAGGGGTGAGGTTGCCTTTGGGGT

CGAGCTTCTCTCCTGCAAGGGGGGAGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCG

GCTGGATCACCT
>T_celer
ATTCCGGTTGATCCTGCCGGAGGCCACTGCTATGGGGGTCCGACTAAGCCATGCGAGTCA

TGGGGCCTTGCGCGCACGGCGGACGGCTCAGTAACACGTCGGTAACCTACCCTCGGGAGG...